species:   Rhsol
pid:       PID0602
parent:    Rhi-milR-175
paralog:   
locus:     KB317702.1:381257-381367
matures:   ['UUUAAUCGAGGACGGACCAUAG', 'CUGCUCUCGAUUAAAUU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317702.1:381257-381367

0 out of bounds
162 alignments
162 proper strand
10 stranded perfect matches

                                          *******************     ************************                     
GCGAAGAGGAGGGAAGAGGAAGAGCAGGCUGCACAGGUAUGUUUCUGCUCUCGAUUAAAUUGGAGUGAUUUAAUCGAGGACGGACCAUAGGCAUAUGCGGACUUUAUCGAU
.....................((..((((((((....((((((((((.(((((((((((((.....))))))))))))).)))).....))))))))))).)))..))...
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAUAG--------------------- l=22 a=5 c
--------------------------------------------CUGCUCUCGAUUAAAUU-------------------------------------------------- l=17 a=0 c*
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAUAG--------------------- l=22 a=5 ma
--------------------------------------------CUGCUCUCGAUUAAAUU-------------------------------------------------- l=17 a=0 ma*

----------------------------------------------------------------------UAAUCGAGGACGGACCAUAGu-------------------- l=21 a=3 
---------------------------------------------------------------------UUAAUCGAGGACGGACCAUAG--------------------- l=21 a=3 
---------------------------------------------------------------------UUAAUCGAGGACGGACCAUAGu-------------------- l=22 a=21 
---------------------------------------------------------------------UUAAUCGAGGACGGACCAUAGa-------------------- l=22 a=3 
---------------------------------------------------------------------UUAAUCGAGGACGGACCAUAGc-------------------- l=22 a=1 
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAU----------------------- l=20 a=1 
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAUAG--------------------- l=22 a=5 (c,ma)
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAUAGa-------------------- l=23 a=16 
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAUAGu-------------------- l=23 a=106 
--------------------------------------------------------------------UUUAAUCGAGGACGGACCAUAGc-------------------- l=23 a=2 
---------------------------------------------------------------AGUGAUUUAAUCGAGGACGGA--------------------------- l=21 a=1 

mb-00011
ax-1011011
ku-01
ss-111111111000
fn-111
